PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aradu.2K11I
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HSF
Protein Properties Length: 416aa    MW: 46874.5 Da    PI: 6.2487
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aradu.2K11IgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind102.53.8e-32291472103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHT.TEEE---SSBTTTT................XTTSEEE CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmY.gFkkvkdeekksks................kekiweF 81 
                   Fl+k++++++d++l+++isw ++g sfvv+d+ ef++ vLp+ Fkh+nf+SFvRQLn+Y  F++++++ ++                   +++ weF
   Aradu.2K11I  29 FLSKTFDLVDDPSLDTIISWGSTGASFVVWDPMEFSRLVLPRNFKHNNFSSFVRQLNTYiAFSNTDSSAHNLVCqenllvgvciqgfrkiDTDKWEF 125
                   9**********************************************************668888777765443788998888877765449***** PP

                   EESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  82 khksFkkgkkellekikrkkse 103
                    ++ F++gkk+ll++i+r++s+
   Aradu.2K11I 126 FNEAFQRGKKHLLKNIQRRRST 147
                   *******************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467852.45E-2924144IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004154.3E-4425144IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.106.5E-3426144IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004472.1E-2829144IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-122952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-126779IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-128092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009408Biological Processresponse to heat
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MKKPNEEPKA GDVHNRPLEC LHGNPVPPFL SKTFDLVDDP SLDTIISWGS TGASFVVWDP  60
MEFSRLVLPR NFKHNNFSSF VRQLNTYIAF SNTDSSAHNL VCQENLLVGV CIQGFRKIDT  120
DKWEFFNEAF QRGKKHLLKN IQRRRSTQSQ QVGSHIGTSI DAGRPGLEVE IELLRKERSM  180
LMQEVVDLQQ QQRRTVHHAG EVNQRLESAE QRQKQMVSFL AKLFQNPAFL ARLRDKKEQR  240
QIESPKARRK FIKHQHEAGN SETPKGQVVR YQPDWKNRTV SSETPELNPV SFEQSPQYLS  300
QDLAREISVG AENLTLQLDK IMSDELGALH EAMPTPGILE DAWDPAFNAS VAASSCGNEL  360
WGNPVNHGVP EFGGTSGVSD IWDIGSGSLG IDKWPADESP MDKKESQGGQ PEDDRP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A2e-192614917125Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230238ARLRDKKEQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016184779.10.0PREDICTED: heat stress transcription factor A-3
TrEMBLA0A072VKE11e-169A0A072VKE1_MEDTR; Heat shock transcription factor A3
STRINGGLYMA13G21490.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF87823038
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03720.11e-97heat shock transcription factor A3